Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs79311193 | chr6:74370368 | T/C | 1.72E-5 | 409 | 6.47 | 13.43 | 17.1 | KM Plot |
| HNSC | rs7936426 | chr11:34990705 | G/A | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs7964008 | chr12:120918397 | C/T | 1.38E-5 | 408 | 16.23 | 17.37 | 6.23 | KM Plot |
| HNSC | rs79681549 | chr22:42307895 | T/C | 2.6E-6 | 406 | 15.73 | 19.47 | 10.42 | KM Plot |
| HNSC | rs7981457 | chr13:66823581 | A/T | 2.98E-5 | 412 | 5.03 | 16.23 | 16.38 | KM Plot |
| HNSC | rs7985377 | chr13:51865008 | C/T | 6.2E-8 | 412 | 16.27 | 16.25 | 3 | KM Plot |
| HNSC | rs80034080 | chr11:34984575 | T/C | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs80042369 | chr3:42101087 | C/T | 0 | 405 | 16.17 | 16.87 | 0.07 | KM Plot |
| HNSC | rs8024579 | chr15:40857709 | A/T | 1.41E-8 | 412 | 4.62 | 18.63 | 16.2 | KM Plot |
| HNSC | rs8028653 | chr15:35283912 | A/G | 0 | 412 | 0.07 | 16.37 | 16.17 | KM Plot |
| HNSC | rs8046914 | chr16:52400405 | A/G | 5.8E-8 | 412 | 3 | 16.27 | 16.3 | KM Plot |
| HNSC | rs8118462 | chr20:44436167 | C/G | 2.49E-7 | 408 | 16.43 | 14.67 | 9.13 | KM Plot |
| HNSC | rs8138467 | chr22:24458096 | A/G | 1.4E-6 | 411 | 5.68 | 14.47 | 16.33 | KM Plot |
| HNSC | rs8138799 | chr22:24556902 | G/A | 1.95E-5 | 412 | 16.35 | 15.87 | 10.02 | KM Plot |
| HNSC | rs8140812 | chr22:24553535 | C/T | 2.76E-5 | 412 | 16.4 | 14.47 | 10.02 | KM Plot |